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Sales Tax Audits: Common Triggers, Risks, and How to Prepare

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January 23, 2025
12
min
Sam Suechting
Sam Suechting
Sales Tax Audits: Common Triggers, Risks, and How to Prepare
Key Takeaways
  • Importance of Sales Tax Audits: Sales tax audits are a process where tax authorities review a business's sales tax records to ensure compliance.
  • Recognizing Common Audit Triggers: Businesses must be aware of common audit triggers include filing errors, inconsistencies in reporting, changes in nexus, and large deductions.
  • Industries at Higher Risk: Certain high-risk industries, including e-commerce, SaaS, and hospitality, are more prone to audits due to the complexity of their sales tax obligations.
  • Preparing for Audits: Businesses should prepare for audits by organizing records, ensuring accurate filings, and consulting with tax professionals.
  • Consequences of Non-Compliance: Failing to comply with sales tax laws can lead to severe consequences, including penalties, interest, and potential reputational damage.
  • Reducing Audit Risks through Compliance Practices: Businesses should prepare for audits by organizing records, ensuring accurate filings, and consulting with tax professionals..
  • Leveraging Technology for Compliance: Companies can reduce audit risks through better compliance practices and leveraging technology.

Anyone in the business world would agree that sales tax audits are an inevitable part of doing business, especially in the US, where state and local tax authorities meticulously enforce sales tax regulations. No matter how old or new a business is, these audits can seem daunting, but understanding the process and preparing effectively can minimize disruptions. In this article, we will explore what a sales tax audit is, why it happens, common triggers, the audit process, and how businesses can stay compliant to reduce risks.

Further, at Commenda, we specialize in helping businesses streamline their tax compliance processes, reducing the likelihood of an audit and easing the burden if an audit does occur. So,let’s dive into the details of a sales tax audit.

What Is a Sales Tax Audit?

A sales tax audit is a review by state or local tax authorities to verify a business's compliance with sales tax laws. During an audit, the tax department will assess whether a company has properly calculated, collected, and remitted sales tax on its transactions. 

If you’re new to compliance, our sales tax guide can help you understand the basics, including common triggers and processes.

Audits are typically conducted to ensure businesses adhere to sales tax obligations and do not underreport the taxes owed.

Sales tax audits can be routine or triggered by specific red flags, such as inconsistencies in filed returns, errors in remittances, or irregularities in exemption certificates. Thus, understanding the audit process and what auditors focus on is key for any business owner.

Why Are Sales Tax Audits Conducted?

Sales tax audits serve multiple purposes, including ensuring compliance, recovering unpaid taxes, and preventing fraud. Businesses that misunderstand the differences between sales tax and vat tax or fail to report correctly are often targeted. 

Primarily, they help tax authorities:

  1. Ensure Compliance: Audits confirm that businesses are following sales tax laws correctly and paying the required amounts to the state or local government.
  2. Recover Unpaid Taxes: If discrepancies are found, auditors will work to recover any unpaid sales tax, along with penalties and interest.
  3. Prevent Fraud: Auditors are also on the lookout for fraudulent activities, such as underreporting sales or misclassifying transactions to avoid tax obligations.

In short, sales tax audits are a tool for both compliance and recovery. Tax authorities use audits to ensure the system works fairly and businesses are contributing their fair share to state and local coffers.

Common Triggers for Sales Tax Audits

While tax authorities can choose to audit any business, certain factors increase the likelihood of an audit. Common triggers include:

1. Filing Errors

Simple mistakes in tax filings can raise a red flag. Missing or incorrect information, like incorrect sales tax rates or wrong exemption claims, may prompt an audit. It’s essential for businesses to double-check all forms before submitting them. Learn more about managing exemptions with our guide to sales tax exemptions certificates.

2. Inconsistencies in Reporting

If a business’s sales reports and tax filings don’t match up, it can indicate discrepancies that need to be addressed. Inconsistent tax returns, especially when they differ substantially from year to year, may prompt auditors to take a closer look.

3. High-Risk Industries

Certain industries are more prone to audits due to their higher risk of non-compliance. These include:

  • E-commerce: Online businesses often deal with complex multi-state tax laws, making them prime candidates for audits.
  • SaaS (Software as a Service): Subscription-based businesses, especially those with varying customer locations, face unique tax challenges that may raise concerns.
  • Hospitality and Retail: Businesses in these sectors frequently deal with high volumes of cash transactions and may have a higher chance of underreporting sales.

4. Nexus Changes

When a business establishes a physical or economic presence in a new state (also known as nexus), it may trigger sales tax obligations in that state. Auditors will examine whether the company has complied with tax laws in states where it has a different sales tax nexus.

5. Large or Unusual Deductions

Claims for large deductions, exemptions, or credits may also trigger an audit. If the business claims excessive tax deductions that appear inconsistent with its financial statements, it may catch the attention of auditors. Businesses must stay informed about sales tax thresholds to avoid crossing limits unknowingly.

By staying mindful of these triggers and being proactive about compliance, businesses can reduce the chances of an audit.

Types of Businesses Most Vulnerable to Audits

As briefly mentioned earlier under High-Risk Industries, certain sectors face a higher likelihood of sales tax audits due to the complexity of their operations and industry-specific challenges. Let’s take a closer look at these businesses and explore why they are particularly vulnerable to audit scrutiny.

1. E-commerce and Online Retailers

With complex multi-state sales tax laws, e-commerce businesses must follow the rules on out-of-state resale certificates to avoid non-compliance and often face audits due to issues like nexus and varying state tax rates. Mistakes in tax collection or reporting can easily trigger an audit.

2. SaaS and Subscription-Based Models

SaaS companies and businesses with recurring billing often face confusion over whether their services are taxable in different states. Misuse of taxability rules or inconsistent billing practices in these businesses can lead to audits.

3. Multi-State Businesses

Companies operating in multiple states are at higher risk, as each state has its own nexus rules and tax rates. Managing tax obligations across jurisdictions can be complex, increasing the chances of errors and audits.

4. Manufacturers and Wholesalers

Manufacturers often deal with tax exemptions on raw materials, but misclassifying purchases or failing to maintain proper records can lead to audit issues. Incorrect inventory reporting or failure to track nexus can also raise red flags for auditors.

5. Service-Based Businesses

While many services are exempt from sales tax, some states tax specific services, making sales tax compliance particularly challenging for service providers. Service-based businesses must ensure they are properly classifying their services and collecting tax where required, as errors in this area are often targeted by audits.

6. Hospitality and Entertainment

Restaurants, hotels, and entertainment venues are prone to audits due to high volumes of transactions and complex tax rules for bundled services (e.g., accommodations, meals, and event tickets). Inaccurate reporting or failure to apply the right tax rates can attract scrutiny.

7. Nonprofits and Charities

Though non-profits are generally exempt from sales tax, errors in applying for exemptions or identification of an unrelated business income can lead to audits. Nonprofits must ensure they correctly document their tax-exempt status and remain compliant with state regulations.

Key Steps in a Sales Tax Audit Process

If your business is selected for a sales tax audit, understanding the process can help ease anxiety. Here's what you can expect:

1. Receiving the Audit Notice

The audit begins when your business receives an official audit notice from the tax authority. This notice will outline the period under review, the information required, and the audit schedule. Also auditors typically outline the statute of limitations for audits in their initial communication.

2. Preparing for the Audit

After receiving the notice, gather the necessary records (e.g., tax filings, invoices, sales records). You may also want to appoint a designated point person to liaise with the auditors and manage communications.

3. Reviewing Your Records

Auditors will request a range of documentation, including:

  • Tax returns and supporting schedules
  • Sales records and invoices
  • Exemption certificates
  • Purchase orders and contracts

You may be asked to explain specific transactions or provide additional information to substantiate your claims. For multi-state businesses, obtaining a sales tax permit is a crucial step for compliance.

4. Conducting the Audit

The auditors will typically review the documents, calculate any discrepancies, and ask for clarifications. They may also conduct interviews with key personnel in your business.

5. Resolution

Once the audit is completed, the tax authorities will issue a report outlining their findings. If they find that taxes are owed, they will provide an assessment that includes the amount owed, plus any penalties and interest.

6. Appeals and Dispute Resolution

If your business disagrees with the audit results, there are usually options for appeal. This process involves filing a formal dispute and potentially negotiating a settlement.

Documents and Records Auditors Request

During a sales tax audit, businesses will be asked to provide various documents to substantiate their tax filings. These include:

  1. Tax Returns: Complete copies of sales tax returns filed for the audited period.
  2. Invoices: Documentation that shows sales transactions, the amount of sales tax collected, and the taxable nature of each sale.
  3. Exemption Certificates: If your business has sold to exempt customers (e.g., non-profits or government agencies), these certificates must be provided to demonstrate tax exemptions. Proper documentation of these certificates can save businesses during audits. Use tools like sales tax exemption certificate management software to keep records in order.
  4. Receipts and Purchases: Records of purchases made, especially those that are exempt from sales tax.

It is wise to have these documents well-organized and readily available as they can speed up the audit process and reduce the chances of disputes.

Potential Consequences of Non-Compliance

The consequences of failing a sales tax audit can be severe, including:

  1. Penalties: The tax authority may impose financial penalties for underreporting sales or failing to collect the correct amount of sales tax.
  2. Interest: In addition to penalties, businesses will typically owe interest on any underpaid taxes.
  3. Reputational Damage: An audit finding that your business is non-compliant can harm its reputation, affecting customer trust and relationships with vendors.
  4. Criminal Prosecution: In cases of fraud or intentional evasion, businesses may face criminal charges.

Learn how to remit sales tax correctly to avoid these consequences.

How to Prepare for a Sales Tax Audit

Thorough preparation in advance can significantly reduce the stress and complexity of an audit for businesses, ensuring a smoother process. This includes:

  1. Organize Your Records: Keep accurate, up-to-date records of all sales, purchases, and tax filings.
  2. Review Your Sales Tax Calculations: Conduct internal reviews to ensure tax calculations are accurate and consistent. Use our manual sales tax calculation guide to verify your tax filings.
  3. Designate a Point Person: Assign a person responsible for overseeing the audit process and communicating with auditors.
  4. Seek Professional Help: If you're unsure about the compliance, consider hiring a tax advisor or consultant to review the processes for your business.

Leveraging Technology for Compliance

Automation tools can help businesses streamline their sales tax calculations and filings, reducing the risk of human error and simplifying the sales tax compliance process. Further, Commenda can help your business stay up-to-date with constantly changing sales tax laws and regulations, especially when operating in multiple states. Additionally, by automating these tasks, businesses can ensure accuracy, save time, and reduce the likelihood of costly mistakes or audits.

How to Respond to an Audit Notice

If you receive an audit notice, follow these steps:

  1. Review the Notice: Thoroughly understand which period is being audited and what documents are required.
  2. Consult a Tax Professional: If you are uncertain about the audit, consider seeking guidance from a tax professional.
  3. Prepare Documents and Information: Organize your records, ensuring they are clear and accessible.
  4. Communicate with the Auditor: Be responsive and cooperate with the auditor while maintaining a professional relationship.

For businesses concerned about audits, learn more about why sales tax is important for businesses and how to remain compliant.

Strategies to Avoid Future Audits

To minimize the risk of future audits:

  1. Ensure Accurate Filings: File your sales tax returns accurately and on time.
  2. Monitor Nexus Obligations: Stay informed about the states where you have nexus and comply with sales tax rules in those states.
  3. Maintain Proper Exemption Certificates: Keep accurate records of any exemptions granted to your customers.

Further, to ensure your business remains fully compliant and to minimize the risk of future audits, book a demo with Commenda today for tailored assistance in streamlining your sales tax processes.

Explore our resources on sales tax audits and book a consultation with Commenda to safeguard your business.

Differences Between Sales and Use Tax Audits

Although sales tax and use tax are closely related, they are distinct in their application. Sales tax is levied on the sale of goods or services within a jurisdiction, while use tax applies to items purchased without sales tax, typically from out-of-state vendors. 

Understanding the nuances between the two and ensuring compliance with both is crucial for minimizing the risk of audits and maintaining proper tax obligations.

For example, if a business in California purchases equipment from a vendor in Oregon, where no sales tax is charged, the business is required to self-assess and pay California's use tax on that purchase. If the business fails to report this use tax, it could face penalties and an audit from the state tax authority.

The Role of a Tax Advisor in Audits

A tax advisor plays a crucial role during a sales tax audit, providing specialized expertise to help businesses navigate the complexities of tax laws and regulations. Their knowledge can be invaluable in ensuring that your business remains compliant and that your rights are fully protected throughout the audit process. 

A skilled tax advisor can assist with various tasks, from organizing and preparing the necessary documentation to identifying potential areas of risk. They also provide guidance on how to respond to audit inquiries and can represent your business when negotiating with tax authorities. 

With their help, businesses are better equipped to handle audits efficiently, mitigate penalties, and resolve issues promptly, ultimately minimizing the financial and reputational impact of an audit.

Real-World Examples of Sales Tax Audits

1. Wayfair and the Economic Nexus Issue

Wayfair, an online retailer, was audited by multiple states after the U.S. Supreme Court ruling on Wayfair v. South Dakota. This decision required online businesses to collect sales tax in states where they had significant sales, even without a physical presence. Wayfair, initially not collecting tax in many states, faced audits and back taxes. To resolve the issue, they worked with tax advisors and adopted automated systems to track sales tax across all states, ensuring future compliance.

2. Amazon’s VAT Audit in the EU

Amazon faced a VAT (Value Added Tax) audit by the European Union for underreporting taxes on cross-border sales. The company had misunderstood local VAT rules, resulting in unpaid taxes. After the audit, Amazon revamped its VAT reporting process and implemented better systems to track taxes in every EU country, avoiding future audits and penalties.

Learn how to avoid similar issues by staying updated with sales tax thresholds.

FAQs About Sales Tax Audits

  1. How long does an audit take?
    Audits can take anywhere from a few months to a year, depending on the complexity of the case.
  2. What happens if I can't provide requested documents?
    Failure to provide requested documents can lead to fines or a more aggressive audit approach. If you are missing records, communicate with the auditor and explain the situation.
  3. What happens if I owe back taxes after an audit?
    If the audit determines that you owe back taxes, you will typically be required to pay the amount owed along with interest and penalties. Some states may offer payment plans or settlements, depending on your financial situation.
  4. Do I need a tax advisor during an audit?
    While not mandatory, hiring a tax advisor can be extremely beneficial during an audit. They can help you understand complex tax laws, ensure you're complying correctly, and represent you during discussions with auditors.

Conclusion

While a sales tax audit can be stressful, preparation is key to managing it successfully. With the right tools and a proactive approach to compliance, businesses can navigate audits smoothly. Commenda helps businesses stay on top of their sales tax obligations and reduces the likelihood of audit triggers. Stay compliant, keep organized, and consult with Commenda to ensure compliance.

Article by

Sam Suechting

Sam Suechting is Head of Product Operations at Commenda, leading the development of the world’s largest index of business regulations, focusing on transaction tax, tax treaties, and transfer pricing. Previously at Silverhaze Partners, he worked on early-stage venture capital and international joint ventures in the Gulf and East Asia. He is passionate about economic development and the historical impact of corporations on societies and economies.
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